Source code

The TEMP2 GitHub repository is here.
You can also find TEMP2 source code in the Release page

Simulated Data

Simulated sequencing data and insertions used in our benchmark can be directly download via wget:
wget -r https://publications.wenglab.org/TEMP2/data/

However, you can directly download simulated insertions from here
And individual simulated sequencing files are also listed below:

Depth Percentage of chimeric reads Read1 Read2
10X 0.05% dm6.10X.0.0005chi.1.fastq.gz dm6.10X.0.0005chi.2.fastq.gz
10X 0.5% dm6.10X.0.005chi.1.fastq.gz dm6.10X.0.005chi.2.fastq.gz
10X 0% dm6.10X.0chi.1.fastq.gz dm6.10X.0chi.2.fastq.gz
1X 0.05% dm6.1X.0.0005chi.1.fastq.gz dm6.1X.0.0005chi.2.fastq.gz
1X 0.5% dm6.1X.0.005chi.1.fastq.gz dm6.1X.0.005chi.2.fastq.gz
1X 0% dm6.1X.0chi.1.fastq.gz dm6.1X.0chi.2.fastq.gz
20X 0.05% dm6.20X.0.0005chi.1.fastq.gz dm6.20X.0.0005chi.2.fastq.gz
20X 0.5% dm6.20X.0.005chi.1.fastq.gz dm6.20X.0.005chi.2.fastq.gz
20X 0% dm6.20X.0chi.1.fastq.gz dm6.20X.0chi.2.fastq.gz
2X 0.05% dm6.2X.0.0005chi.1.fastq.gz dm6.2X.0.0005chi.2.fastq.gz
2X 0.5% dm6.2X.0.005chi.1.fastq.gz dm6.2X.0.005chi.2.fastq.gz
2X 0% dm6.2X.0chi.1.fastq.gz dm6.2X.0chi.2.fastq.gz
30X 0.05% dm6.30X.0.0005chi.1.fastq.gz dm6.30X.0.0005chi.2.fastq.gz
30X 0.5% dm6.30X.0.005chi.1.fastq.gz dm6.30X.0.005chi.2.fastq.gz
30X 0% dm6.30X.0chi.1.fastq.gz dm6.30X.0chi.2.fastq.gz
3X 0.05% dm6.3X.0.0005chi.1.fastq.gz dm6.3X.0.0005chi.2.fastq.gz
3X 0.5% dm6.3X.0.005chi.1.fastq.gz dm6.3X.0.005chi.2.fastq.gz
3X 0% dm6.3X.0chi.1.fastq.gz dm6.3X.0chi.2.fastq.gz
40X 0.05% dm6.40X.0.0005chi.1.fastq.gz dm6.40X.0.0005chi.2.fastq.gz
40X 0.5% dm6.40X.0.005chi.1.fastq.gz dm6.40X.0.005chi.2.fastq.gz
40X 0% dm6.40X.0chi.1.fastq.gz dm6.40X.0chi.2.fastq.gz
4X 0.05% dm6.4X.0.0005chi.1.fastq.gz dm6.4X.0.0005chi.2.fastq.gz
4X 0.5% dm6.4X.0.005chi.1.fastq.gz dm6.4X.0.005chi.2.fastq.gz
4X 0% dm6.4X.0chi.1.fastq.gz dm6.4X.0chi.2.fastq.gz
50X 0.05% dm6.50X.0.0005chi.1.fastq.gz dm6.50X.0.0005chi.2.fastq.gz
50X 0.5% dm6.50X.0.005chi.1.fastq.gz dm6.50X.0.005chi.2.fastq.gz
50X 0% dm6.50X.0chi.1.fastq.gz dm6.50X.0chi.2.fastq.gz
5X 0.05% dm6.5X.0.0005chi.1.fastq.gz dm6.5X.0.0005chi.2.fastq.gz
5X 0.5% dm6.5X.0.005chi.1.fastq.gz dm6.5X.0.005chi.2.fastq.gz
5X 0% dm6.5X.0chi.1.fastq.gz dm6.5X.0chi.2.fastq.gz
10X 0.05% dm6.10X.0.0005chi.1.fastq.gz dm6.10X.0.0005chi.2.fastq.gz
10X 0.5% dm6.10X.0.005chi.1.fastq.gz dm6.10X.0.005chi.2.fastq.gz
10X 0% dm6.10X.0chi.1.fastq.gz dm6.10X.0chi.2.fastq.gz
1X 0.05% dm6.1X.0.0005chi.1.fastq.gz dm6.1X.0.0005chi.2.fastq.gz
1X 0.5% dm6.1X.0.005chi.1.fastq.gz dm6.1X.0.005chi.2.fastq.gz
1X 0% dm6.1X.0chi.1.fastq.gz dm6.1X.0chi.2.fastq.gz
20X 0.05% dm6.20X.0.0005chi.1.fastq.gz dm6.20X.0.0005chi.2.fastq.gz
20X 0.5% dm6.20X.0.005chi.1.fastq.gz dm6.20X.0.005chi.2.fastq.gz
20X 0% dm6.20X.0chi.1.fastq.gz dm6.20X.0chi.2.fastq.gz
2X 0.05% dm6.2X.0.0005chi.1.fastq.gz dm6.2X.0.0005chi.2.fastq.gz
2X 0.5% dm6.2X.0.005chi.1.fastq.gz dm6.2X.0.005chi.2.fastq.gz
2X 0% dm6.2X.0chi.1.fastq.gz dm6.2X.0chi.2.fastq.gz
30X 0.05% dm6.30X.0.0005chi.1.fastq.gz dm6.30X.0.0005chi.2.fastq.gz
30X 0.5% dm6.30X.0.005chi.1.fastq.gz dm6.30X.0.005chi.2.fastq.gz
30X 0% dm6.30X.0chi.1.fastq.gz dm6.30X.0chi.2.fastq.gz
3X 0.05% dm6.3X.0.0005chi.1.fastq.gz dm6.3X.0.0005chi.2.fastq.gz
3X 0.5% dm6.3X.0.005chi.1.fastq.gz dm6.3X.0.005chi.2.fastq.gz
3X 0% dm6.3X.0chi.1.fastq.gz dm6.3X.0chi.2.fastq.gz
40X 0.05% dm6.40X.0.0005chi.1.fastq.gz dm6.40X.0.0005chi.2.fastq.gz
40X 0.5% dm6.40X.0.005chi.1.fastq.gz dm6.40X.0.005chi.2.fastq.gz
40X 0% dm6.40X.0chi.1.fastq.gz dm6.40X.0chi.2.fastq.gz
4X 0.05% dm6.4X.0.0005chi.1.fastq.gz dm6.4X.0.0005chi.2.fastq.gz
4X 0.5% dm6.4X.0.005chi.1.fastq.gz dm6.4X.0.005chi.2.fastq.gz
4X 0% dm6.4X.0chi.1.fastq.gz dm6.4X.0chi.2.fastq.gz
50X 0.05% dm6.50X.0.0005chi.1.fastq.gz dm6.50X.0.0005chi.2.fastq.gz
50X 0.5% dm6.50X.0.005chi.1.fastq.gz dm6.50X.0.005chi.2.fastq.gz
50X 0% dm6.50X.0chi.1.fastq.gz dm6.50X.0chi.2.fastq.gz
5X 0.05% dm6.5X.0.0005chi.1.fastq.gz dm6.5X.0.0005chi.2.fastq.gz
5X 0.5% dm6.5X.0.005chi.1.fastq.gz dm6.5X.0.005chi.2.fastq.gz
5X 0% dm6.5X.0chi.1.fastq.gz dm6.5X.0chi.2.fastq.gz