Download

Source code

The TEMP2 GitHub repository is here.
You can also find TEMP2 source code in the Release page

Simulated Data

Simulated sequencing data and insertions used in our benchmark can be directly download via wget:
wget -r https://publications.wenglab.org/TEMP2/data/

However, you can directly download simulated insertions from here
And individual simulated sequencing files are also listed below:

Depth	Percentage of chimeric reads	Read1	Read2
10X	0.05%	dm6.10X.0.0005chi.1.fastq.gz	dm6.10X.0.0005chi.2.fastq.gz
10X	0.5%	dm6.10X.0.005chi.1.fastq.gz	dm6.10X.0.005chi.2.fastq.gz
10X	0%	dm6.10X.0chi.1.fastq.gz	dm6.10X.0chi.2.fastq.gz
1X	0.05%	dm6.1X.0.0005chi.1.fastq.gz	dm6.1X.0.0005chi.2.fastq.gz
1X	0.5%	dm6.1X.0.005chi.1.fastq.gz	dm6.1X.0.005chi.2.fastq.gz
1X	0%	dm6.1X.0chi.1.fastq.gz	dm6.1X.0chi.2.fastq.gz
20X	0.05%	dm6.20X.0.0005chi.1.fastq.gz	dm6.20X.0.0005chi.2.fastq.gz
20X	0.5%	dm6.20X.0.005chi.1.fastq.gz	dm6.20X.0.005chi.2.fastq.gz
20X	0%	dm6.20X.0chi.1.fastq.gz	dm6.20X.0chi.2.fastq.gz
2X	0.05%	dm6.2X.0.0005chi.1.fastq.gz	dm6.2X.0.0005chi.2.fastq.gz
2X	0.5%	dm6.2X.0.005chi.1.fastq.gz	dm6.2X.0.005chi.2.fastq.gz
2X	0%	dm6.2X.0chi.1.fastq.gz	dm6.2X.0chi.2.fastq.gz
30X	0.05%	dm6.30X.0.0005chi.1.fastq.gz	dm6.30X.0.0005chi.2.fastq.gz
30X	0.5%	dm6.30X.0.005chi.1.fastq.gz	dm6.30X.0.005chi.2.fastq.gz
30X	0%	dm6.30X.0chi.1.fastq.gz	dm6.30X.0chi.2.fastq.gz
3X	0.05%	dm6.3X.0.0005chi.1.fastq.gz	dm6.3X.0.0005chi.2.fastq.gz
3X	0.5%	dm6.3X.0.005chi.1.fastq.gz	dm6.3X.0.005chi.2.fastq.gz
3X	0%	dm6.3X.0chi.1.fastq.gz	dm6.3X.0chi.2.fastq.gz
40X	0.05%	dm6.40X.0.0005chi.1.fastq.gz	dm6.40X.0.0005chi.2.fastq.gz
40X	0.5%	dm6.40X.0.005chi.1.fastq.gz	dm6.40X.0.005chi.2.fastq.gz
40X	0%	dm6.40X.0chi.1.fastq.gz	dm6.40X.0chi.2.fastq.gz
4X	0.05%	dm6.4X.0.0005chi.1.fastq.gz	dm6.4X.0.0005chi.2.fastq.gz
4X	0.5%	dm6.4X.0.005chi.1.fastq.gz	dm6.4X.0.005chi.2.fastq.gz
4X	0%	dm6.4X.0chi.1.fastq.gz	dm6.4X.0chi.2.fastq.gz
50X	0.05%	dm6.50X.0.0005chi.1.fastq.gz	dm6.50X.0.0005chi.2.fastq.gz
50X	0.5%	dm6.50X.0.005chi.1.fastq.gz	dm6.50X.0.005chi.2.fastq.gz
50X	0%	dm6.50X.0chi.1.fastq.gz	dm6.50X.0chi.2.fastq.gz
5X	0.05%	dm6.5X.0.0005chi.1.fastq.gz	dm6.5X.0.0005chi.2.fastq.gz
5X	0.5%	dm6.5X.0.005chi.1.fastq.gz	dm6.5X.0.005chi.2.fastq.gz
5X	0%	dm6.5X.0chi.1.fastq.gz	dm6.5X.0chi.2.fastq.gz
10X	0.05%	dm6.10X.0.0005chi.1.fastq.gz	dm6.10X.0.0005chi.2.fastq.gz
10X	0.5%	dm6.10X.0.005chi.1.fastq.gz	dm6.10X.0.005chi.2.fastq.gz
10X	0%	dm6.10X.0chi.1.fastq.gz	dm6.10X.0chi.2.fastq.gz
1X	0.05%	dm6.1X.0.0005chi.1.fastq.gz	dm6.1X.0.0005chi.2.fastq.gz
1X	0.5%	dm6.1X.0.005chi.1.fastq.gz	dm6.1X.0.005chi.2.fastq.gz
1X	0%	dm6.1X.0chi.1.fastq.gz	dm6.1X.0chi.2.fastq.gz
20X	0.05%	dm6.20X.0.0005chi.1.fastq.gz	dm6.20X.0.0005chi.2.fastq.gz
20X	0.5%	dm6.20X.0.005chi.1.fastq.gz	dm6.20X.0.005chi.2.fastq.gz
20X	0%	dm6.20X.0chi.1.fastq.gz	dm6.20X.0chi.2.fastq.gz
2X	0.05%	dm6.2X.0.0005chi.1.fastq.gz	dm6.2X.0.0005chi.2.fastq.gz
2X	0.5%	dm6.2X.0.005chi.1.fastq.gz	dm6.2X.0.005chi.2.fastq.gz
2X	0%	dm6.2X.0chi.1.fastq.gz	dm6.2X.0chi.2.fastq.gz
30X	0.05%	dm6.30X.0.0005chi.1.fastq.gz	dm6.30X.0.0005chi.2.fastq.gz
30X	0.5%	dm6.30X.0.005chi.1.fastq.gz	dm6.30X.0.005chi.2.fastq.gz
30X	0%	dm6.30X.0chi.1.fastq.gz	dm6.30X.0chi.2.fastq.gz
3X	0.05%	dm6.3X.0.0005chi.1.fastq.gz	dm6.3X.0.0005chi.2.fastq.gz
3X	0.5%	dm6.3X.0.005chi.1.fastq.gz	dm6.3X.0.005chi.2.fastq.gz
3X	0%	dm6.3X.0chi.1.fastq.gz	dm6.3X.0chi.2.fastq.gz
40X	0.05%	dm6.40X.0.0005chi.1.fastq.gz	dm6.40X.0.0005chi.2.fastq.gz
40X	0.5%	dm6.40X.0.005chi.1.fastq.gz	dm6.40X.0.005chi.2.fastq.gz
40X	0%	dm6.40X.0chi.1.fastq.gz	dm6.40X.0chi.2.fastq.gz
4X	0.05%	dm6.4X.0.0005chi.1.fastq.gz	dm6.4X.0.0005chi.2.fastq.gz
4X	0.5%	dm6.4X.0.005chi.1.fastq.gz	dm6.4X.0.005chi.2.fastq.gz
4X	0%	dm6.4X.0chi.1.fastq.gz	dm6.4X.0chi.2.fastq.gz
50X	0.05%	dm6.50X.0.0005chi.1.fastq.gz	dm6.50X.0.0005chi.2.fastq.gz
50X	0.5%	dm6.50X.0.005chi.1.fastq.gz	dm6.50X.0.005chi.2.fastq.gz
50X	0%	dm6.50X.0chi.1.fastq.gz	dm6.50X.0chi.2.fastq.gz
5X	0.05%	dm6.5X.0.0005chi.1.fastq.gz	dm6.5X.0.0005chi.2.fastq.gz
5X	0.5%	dm6.5X.0.005chi.1.fastq.gz	dm6.5X.0.005chi.2.fastq.gz
5X	0%	dm6.5X.0chi.1.fastq.gz	dm6.5X.0chi.2.fastq.gz